Gil Omenn is an expert in genetics, proteomics, bioinformatics, and precision medicine. He is Distinguished University Professor of Computational Medicine & Bioinformatics, Internal Medicine, Human Genetics, and Public Health, and Director of the University-wide Center for Computational Medicine & Bioinformatics at the University of Michigan. He is a former Howard Hughes Medical Institute Investigator, a longtime NCI-funded PI, a physician long involved in Genetic Counseling at the University of Washington and University of Michigan, and the first CEO of the University of Michigan Health System. Read his full bio.
PMWC 2018 Michigan taking place June 6-7, 2018.
Q&A with Gil Omenn, University of Michigan
Q: What are the objectives of the Human Proteome Project and what are some of the recent breakthrough discoveries?
A: The HUPO Human Proteome Project has two overarching goals: (1) to complete the protein parts list, with at least one protein product from each of the ~20,000 protein-coding genes along with sequence variants, splice variants, and post-translational modifications, with characterization of their functions; and (2) to make proteomics a full partner of genomics, transcriptomics, epigenomics, and metabolomics in pan-omics molecular studies of health and disease.
Successes of the Human Proteome Project include (1) creation of ProteomeXchange to collect proteomics datasets and the full description of the sample and methods (meta-data), with links to PeptideAtlas for reanalysis of the MS/MS raw data with a standardized TransProteomicPipeline across all datasets; (2) implementation of quality assurance Guidelines for Interpretation of Mass Spectrometry Data widely used in the field; (3) documentation of progress on the Human Proteome around the globe with the HPP annual metrics and the gold standard of neXtProt curation, showing growth from 13,000 credible protein identifications in 2013 to 17,470 in 2018, representing 89% of the predicted human proteins (neXtProt categories PE1-4); (4) development of the field of targeted proteomics with the public availability of the SRM Atlas, with spectra for unique peptides of all of the~20,000 coded proteins; and (5) numerous in-depth studies of the proteins and variant proteins associated with diseases of nearly all human organs.
Q: You were the first to recognize the need for integrated approach to computational medicine and bioinformatics. Why is it so critical?
A: In 2007 we created the University of Michigan-wide Center for Computational Medicine and Bioinformatics and our NIH-funded National Center for Integrative Biomedical Informatics. All of biology and medicine is becoming more quantitative and more dependent upon computational algorithms and models to understand changes in pathways and networks of cells and organs critical for health and disease. Genomics, proteomics, brain studies, and clinical records require advanced computational methods to analyze and model “big data”.
Q: What are the key scientific areas that still need to be developed so that precision medicine can be implemented effectively in community setting?
A: At this point, “precision medicine” is still aspirational; much more must be learned about the individual differences among patients in the causation and progression of disease and the most effective interventions to prevent or treat the disease. We are fast accumulating “dense, dynamic, personal data clouds” for individuals, yet we must understand the dynamics of pathways, networks, gene modifiers, social and environmental exposures, and human behaviors in determining the “phenotype”, the distinctive features in each person/each patient.
Q: Can you please reflect on the “Paths Less Travel’d” choices you have made throughout your career?
A: Ah, this question is a reference to my Distinguished University Professor Lecture of 2016. Following my curiosity and sense of opportunity, I pursued biochemical genetic studies of the brain, when the brain was perceived as much too difficult for such projects; interactions between genes and risky environmental exposures (“eco-genetics”) instead of just the toxicities of environmental chemicals; proteins and proteomics when many colleagues were absorbed with genes and transcripts (DNA/RNA) alone; and a commitment to link basic science with clinical applications and to combine science and policy of individual patient care with health promotion and disease prevention for whole populations.
The Precision Medicine World Conference (PMWC), in its 17th installment, will take place in the Santa Clara Convention Center (Silicon Valley) on January 21-24, 2020. The program will traverse innovative technologies, thriving initiatives, and clinical case studies that enable the translation of precision medicine into direct improvements in health care. Conference attendees will have an opportunity to learn first-hand about the latest developments and advancements in precision medicine and cutting-edge new strategies and solutions that are changing how patients are treated.
See 2019 Agenda highlights:
- Five tracks will showcase sessions on the latest advancements in precision medicine which include, but are not limited to:
- AI & Data Science Showcase
- Clinical & Research Tools Showcase
- Clinical Dx Showcase
- Creating Clinical Value with Liquid Biopsy ctDNA, etc.
- Digital Health/Health and Wellness
- Digital Phenotyping
- Diversity in Precision Medicine
- Drug Development (PPPs)
- Early Days of Life Sequencing
- Emerging Technologies in PM
- Emerging Therapeutic Showcase
- FDA Efforts to Accelerate PM
- Gene Editing
- Genomic Profiling Showcase
- Immunotherapy Sessions & Showcase
- Implementation into Health Care Delivery
- Large Scale Bio-data Resources to Support Drug Development (PPPs)
- Microbial Profiling Showcase
- Microbiome
- Neoantigens
- Next-Gen. Workforce of PM
- Non-Clinical Services Showcase
- Pharmacogenomics
- Point-of Care Dx Platform
- Precision Public Health
- Rare Disease Diagnosis
- Resilience
- Robust Clinical Decision Support Tools
- Wellness and Aging Showcase
See 2019 Agenda highlights:
- Five tracks will showcase sessions on the latest advancements in precision medicine which include, but are not limited to:
- AI & Data Science Showcase
- Clinical & Research Tools Showcase
- Clinical Dx Showcase
- Creating Clinical Value with Liquid Biopsy ctDNA, etc.
- Digital Health/Health and Wellness
- Digital Phenotyping
- Diversity in Precision Medicine
- Drug Development (PPPs)
- Early Days of Life Sequencing
- Emerging Technologies in PM
- Emerging Therapeutic Showcase
- FDA Efforts to Accelerate PM
- Gene Editing / CRISPR
- Genomic Profiling Showcase
- Immunotherapy Sessions & Showcase
- Implementation into Health Care Delivery
- Large Scale Bio-data Resources to Support Drug Development (PPPs)
- Microbial Profiling Showcase
- Microbiome
- Neoantigens
- Next-Gen. Workforce of PM
- Non-Clinical Services Showcase
- Pharmacogenomics
- Point-of Care Dx Platform
- Precision Public Health
- Rare Disease Diagnosis
- Resilience
- Robust Clinical Decision Support Tools
- Wellness and Aging Showcase
- A lineup of 450+ highly regarded speakers featuring pioneering researchers and authorities across the healthcare and biotechnology sectors
- Luminary and Pioneer Awards, honoring individuals who contributed, and continue to contribute, to the field of Precision Medicine
- 2000+ multidisciplinary attendees, from across the entire spectrum of healthcare, representing different types of companies, technologies, and medical centers with leadership roles in precision medicine